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DNA MICROARRAY
Introduction
• As we know that for molecular characterisation of any
gene/genome, nucleotide sequences are required.
Understanding the genome function by analysing the genes
and the ways the genes expressed by the genome have a key
importance.
There is a branch of biology called transcriptomics, which
deals with gene expression in a tissue.
It helps in studying the expression of genes by a genome both
qualitatively- by identifying which genes are expressed and
which are not expressed and qualitatively- by measuring
varying levels of expression for different genes.
So, transcriptome analysis reveals gene expression profiles
that for the same genome may vary from cell to cell or from
tissue type to tissue type.
Identifying genes expressed by a genome is essential for
understanding how the genome functions.
Gene expression can be checked by Northern blotting
technique.
But to check multiple gene expression simultaneously, we
developed a technique called DNA Microarray.
What is DNA microarray
DNA microarray, also known as gene chip is a solid support (like a glass
slide) onto which single stranded DNA molecules are attached.
Each spot of DNA on glass slide called probe which represents a single
gene.
It is widely used because it enables researchers to analyze all of a
sample’s expressed genes simultaneously.
Microarray technology evolved from Southern blotting whereby
fragmented DNA is attached to a substrate and then probed with a
known gene.
Principle
It involves hybridisation of nucleotide sequences.
Probe is complementary to target gene.
Hybridisation produces signal.
Requirements for cDNA based Microarray
Glass slide
Probe (Attached to glass slide)
Fluorescent dye
Scanner
Reverse transcriptase enzyme
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